Connectomics

2013: Connectomic reconstruction of the inner plexiform layer in the mouse retina

Moritz Helmstaedter, Kevin Briggman, Srinivas Turaga, Viren Jain, Sebastian Seung & Winfried Denk
Connectomic reconstruction of the inner plexiform layer in the mouse retina
Nature, August 8, 2013 (link to paper at Nature)

Supplementary information

Original data repository:

• Entire dateset e2006: http://neuro.rzg.mpg.de; (www.knossostool.org)
• Bipolar, Amacrine, Ganglion cell skeletons, contact matrices, contact lists: MATLAB file; PDF description; example code for plotting skeletons with their corresponding somata (.m MATLAB file); example code for generation of contact matrix from contact list (.m MATLAB file)
• Data browser for download: http://neuro.rzg.mpg.de, MATHEMATICA required (java version under development)
• Volume training data used for classifier training: MATLAB file

Research group links:

• Helmstaedter laboratory (www.brain.mpg.de/connectomics)
• Briggman laboratory (neuroscience.nih.gov/Lab.asp?Org_ID=574)
• Jain laboratory (www.hhmi.org/scientists/viren-jain)
• Seung laboratory (http://hebb.mit.edu/people/seung)
• Denk laboratory (www.bi.mpg.de/denk)