Publications of Jörgen Kornfeld

Kornfeld, J.; Januszewski, M.; Schubert, P. J.; Jain, V.; Denk, W.; Fee, M. S.: An anatomical substrate of credit assignment in reinforcement learning. bioRxiv: the preprint server for biology (2025)

Schubert, P. J.; Saxena, R.; Kornfeld, J.: DeepFocus: Fast focus and astigmatism correction for electron microscopy. Nature Communications 15, 948 (2024)

Sigmund, F.; Berezin, O.; Beliakova, S.; Magerl, B.; Drawitsch, M.; Piovesan, A.; Goncalves, F.; Bodea, S.-V.; Winkler, S.; Bousraou, Z. et al.; Grosshauser, M.; Samara, E.; Pujol-Marti, J.; Schadler, S.; So, C.; Irsen, S.; Walch, A.; Kofler, F.; Piraud, M.; Kornfeld, J.; Briggman, K.; Westmeyer, G. G.: Genetically encoded barcodes for correlative volume electron microscopy. Nature Biotechnology 41, pp. 1734 - 1745 (2023)

Bonney, S. K.; Coelho-Santos, V.; Huang, S. F.; Takeno, M.; Kornfeld, J.; Keller, A.; Shih, A. Y. Y.: Public volume electron microscopy data: An essential resource to study the brain microvasculature. Frontiers in Cell and Developmental Biology 10, 849469 (2022)

Schubert, P. J.; Dorkenwald, S.; Januszewski, M.; Klimesch, J.; Svara, F. N.; Mancu, A.; Ahmad, H.; Fee, M. S.; Jain, V.; Kornfeld, J.: SyConn2: Dense synaptic connectivity inference for volume electron microscopy. Nature Methods 19, pp. 1367 - 1370 (2022)

Svara, F. N.; Förster, D.; Kubo, F.; Januszewski, M.; Dal Maschio, M.; Schubert, P. J.; Kornfeld, J.; Wanner, A. A.; Laurell, E.; Denk, W. et al.; Baier, H.: Automated synapse-level reconstruction of neural circuits in the larval zebrafish brain. Nature Methods 19 (11), pp. 1357 - 1366 (2022)

Egger, R.; Tupikov, Y.; Elmaleh, M.; Katlowitz, K. A.; Benezra, S. E.; Picardo, M. A.; Moll, F.; Kornfeld, J.; Jin, D. Z.; Long, M. A.: Local axonal conduction shapes the spatiotemporal properties of neural sequences. Cell 183 (2), pp. 537 - 548.e12 (2020)

Schubert, P. J.; Dorkenwald, S.; Januszewski, M.; Jain, V.; Kornfeld, J.: Learning cellular morphology with neural networks. Nature Communications 10, 2736 (2019)

Januszewski, M.; Kornfeld, J.; Li, P. H.; Pope, A.; Blakely, T.; Lindsey, L.; Maitin-Shepard, J.; Tyka, M.; Denk, W.; Jain, V.: High-precision automated reconstruction of neurons with flood-filling networks. Nature Methods 15 (8), pp. 605 - 610 (2018)

Kornfeld, J.; Denk, W.: Progress and remaining challenges in high-throughput volume electron microscopy. Current Opinion in Neurobiology 50, pp. 261 - 267 (2018)

Svara, F. N.; Kornfeld, J.; Denk, W.; Bollmann, J. H.: Volume EM reconstruction of spinal cord reveals wiring specificity in speed-related motor circuits. Cell Reports 23 (10), pp. 2942 - 2954 (2018)

Dorkenwald, S.; Schubert, P. J.; Killinger, M. F.; Urban, G.; Mikula, S.; Svara, F. N.; Kornfeld, J.: Automated synaptic connectivity inference for volume electron microscopy. Nature Methods 14 (4), pp. 435 - 442 (2017)

Kornfeld, J.; Benezra, S. E.; Narayanan, R. T.; Svara, F. N.; Egger, R.; Oberlaender, M.; Denk, W.; Long, M. A.: EM connectomics reveals axonal target variation in a sequence-generating network. eLife 6, e24364 (2017)

Giret, N.; Kornfeld, J.; Ganguli, S.; Hahnloser, R. H. R.: Evidence for a causal inverse model in an avian cortico-basal ganglia circuit. Proceedings of the National Academy of Sciences of the United States of America 111 (16), pp. 6063 - 6068 (2014)

Lin, Z.; Kornfeld, J.; Machler, M.; van Gunsteren, W. F.: Prediction of folding equilibria of differently substituted peptides using one-step perturbation. Journal of the American Chemical Society 132 (21), pp. 7276 - 7278 (2010)

Kornfeld, J.; Svara, F. N.; Wanner, A.: Image processing for volume electron microscopy. In: Volume microscopy - multiscale imaging with photons, electrons and ions, pp. 245 - 262 (Eds. Wacker, I.; Hummel , E.; Burgold , S.; Schröder , R.). Springer Neuromethods (2020)

Kornfeld, J. M. R.: Connectomic analyses in the zebra finch brain. Dissertation, Ruprecht-Karls-Universität, Heidelberg (2017)

Kornfeld, J.: Neural correlates of song variability in the brain of a singing bird. Master (2010)

Kornfeld, J.: Investigation and mathematical modeling of en-bloc staining techniques for serial block-face scanning electron microscopy. Bachelor (2008)