Max Planck Institute for Biological Intelligence

Publications of the MPI of Neurobiology

Journal Article (1282)

2024

Journal Article

Félix, R.; Markov, D.; Renninger, S. L.; Tomás, A. R.; Laborde, A.; Carey, M. R.; Orger, M. B.; Portugues, R.: Structural and functional organization of visual responses in the inferior olive of larval zebrafish. The Journal of Neuroscience 44 (8), e2352212023 (2024)

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Kornfeld, J.; Januszewski, M.; Schubert, P. J.; Jain, V.; Denk, W.; Fee, M. S.: An anatomical substrate of credit assignment in reinforcement learning. bioRxiv: the preprint server for biology (2024)

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Mari, J.; Zhang, R.; Mircic, S.; Serbe-Kamp, E.; Meier, M.; Leonhardt, A.; Drews, M. S.; del Grosso, N. A.; Antony, J. W.; Norman, K. A. et al.; Marzullo, T. C.; Gage, G. J.: Study while you sleep: Using targeted memory reactivation as an independent research project for undergraduates. Sourcebook of Laboratory Activities in Physiology (2024)

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Prat, O.; Petrucco, L.; Štih, V.; Portugues, R.: Comparing the representation of a simple visual stimulus across the cerebellar network. eNeuro 11 (7), 0023-24.2024 (2024)

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Ramazanov, B. R.; Parchure, A.; di Martino, R.; Kumar, A.; Chung, M.; Kim, Y.; Griesbeck, O.; Schwartz, M. A.; Luini, A.; von Blume, J.: Calcium flow at ER-TGN contact sites facilitates secretory cargo export. Molecular Biology of the Cell 35 (4), ar50 (2024)

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Smith, K.; Pilger, A.; Amorim, M. L. M.; Mircic, S.; Reining, Z.; Ristow, N.; Miller, D.; Leonhardt, A.; Donovan, J.; Meier, M. et al.; Marzullo, T. C.; Serbe-Kamp, E.; Steiner, A. P.; Gage, G. J.: Low-cost classroom and laboratory exercises for investigating both wave and event-related electroencephalogram potentials. Journal of undergraduate neuroscience education: JUNE: A publication of FUN, Faculty for Undergraduate Neuroscience 22 (3), pp. A197 - A206 (2024)

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Sneddon, L. U.; Schroeder, P.; Roque, A.; Finger-Baier, K.; Fleming, A.; Tinman, S.; Collet, B.: Pain management in zebrafish: Report from a FELASA Working Group. Laboratory Animals 58 (3), pp. 261 - 276 (2024)

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2023

Journal Article

Bauer, I. J.; Fang, P.; Lämmle, K. F.; Tyystjärvi, S.; Alterauge, D.; Baumjohann, D.; Yoon, H.; Korn, T.; Wekerle, H.; Kawakami, N.: Visualizing the activation of encephalitogenic T cells in the ileal lamina propria by in vivo two-photon imaging. Proceedings of the National Academy of Sciences of the United States of America 120 (30), e2302697120 (2023)

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Bianchimano, P.; Iwanowski, K.; Smith, E. M.; Cantor, A.; Leone, P.; Bongers, G.; Gonzalez, C. G.; Yoon, H.; Elias, J.; Weiner, H. L. et al.; Clemente, J. C.; Tankou, S. K.: Oral vancomycin treatment suppresses gut trypsin activity and preserves intestinal barrier function during EAE. iScience 26 (11), 108143 (2023)

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Guarino, C.; Seren, S.; Lemoine, R.; Hummel, A. M.; Margotin, J.-E.; El-Benna, J.; Hoarau, C.; Specks, U.; Jenne, D. E.; Korkmaz, B.: Constitutive and induced forms of membrane-bound proteinase 3 interact with antineutrophil cytoplasmic antibodies and promote immune activation of neutrophils. The Journal of Biological Chemistry 299 (4), 103072 (2023)

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Janakiraman, M.; Leliavski, A.; Varadarajulu, J.; Jenne, D. E.; Krishnamoorthy, G.: An engineered Fc fusion protein that targets antigen-specific T cells and autoantibodies mitigates autoimmune disease. Journal of Neuroinflammation 20, 291 (2023)

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Sakmann, B.; Stahnisch, F. W.: Neuroscience history interview with Professor Bert Sakmann, Nobel Laureate in Physiology or Medicine (1991), Max Planck Society, Germany. Journal of the History of the Neurosciences 32 (2), pp. 198 - 217 (2023)

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Spella, M.; Ntaliarda, G.; Skiadas, G.; Lamort, A.-S.; Vreka, M.; Marazioti, A.; Lilis, I.; Bouloukou, E.; Giotopoulou, G. A.; Pepe, M. A. A. et al.; Weiss, S. A. I.; Petrera, A.; Hauck, S. M.; Koch, I.; Lindner, M.; Hatz, R. A.; Behr, J.; Arendt, K. A. M.; Giopanou, I.; Brunn, D.; Savai, R.; Jenne, D. E.; de Chateau, M.; Yull, F. E.; Blackwell, T. S.; Stathopoulos, G. T.: Non-oncogene addiction of KRAS-mutant cancers to IL-1beta via versican and mononuclear IKKbeta. Cancers / Molecular Diversity Preservation International (MDPI) 15 (6), 1866 (2023)

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van der Westhuizen, C.; Botha, T. L.; Finger-Baier, K.; de Brouwer, G.; Wolmarans, D. W.: Contingency learning in zebrafish exposed to apomorphine- and levetiracetam. Behavioural Pharmacology 34 (7), pp. 424 - 436 (2023)

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Weiler, S.; Guggiana Nilo, D.; Bonhoeffer, T.; Hübener, M.; Rose, T.; Scheuss, V.: Functional and structural features of L2/3 pyramidal cells continuously covary with pial depth in mouse visual cortex. Cerebral Cortex 33 (7), bhac303, pp. 3715 - 3733 (2023)

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Yoon, H.; Lee, Y.; Park, H.; Kang, H.-J.; Ji, Y.; Holzapfel, W. H.: Lactobacillus johnsonii BFE6154 ameliorates diet-induced hypercholesterolemia. Probiotics and Antimicrobial Proteins 15 (3), pp. 451 - 459 (2023)

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2022

Journal Article

Ammer, G.; Viera, R. M.; Fendl, S.; Borst, A.: Anatomical distribution and functional roles of electrical synapses in Drosophila. Current Biology 32 (9), pp. 2022 - 2036.e4 (2022)

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Bandler, R. C.; Vitali, I.; Delgado, R. N.; Ho, M. C.; Dvoretskova, E.; Ibarra Molinas, J. S.; Frazel, P. W.; Mohammadkhani, M.; Machold, R.; Maedler, S. et al.; Liddelow, S. A.; Nowakowski, T. J.; Fishell, G.; Mayer, C.: Single-cell delineation of lineage and genetic identity in the mouse brain. Nature 601 (7893), pp. 404 - 409 (2022)

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publisher-version

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Bharioke, A.; Munz, M.; Brignall, A.; Kosche, G.; Eizinger, M. F.; Ledergerber, N.; Hillier, D.; Gross-Scherf, B.; Conzelmann, K.-K.; Macé, E. et al.; Roska, B.: General anesthesia globally synchronizes activity selectively in layer 5 cortical pyramidal neurons. Neuron 110 (12), pp. 2024 - 2040.e10 (2022)

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Bonney, S. K.; Coelho-Santos, V.; Huang, S. F.; Takeno, M.; Kornfeld, J.; Keller, A.; Shih, A. Y. Y.: Public volume electron microscopy data: An essential resource to study the brain microvasculature. Frontiers in Cell and Developmental Biology 10, 849469 (2022)

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Bruckner, J. J.; Stednitz, S. J.; Grice, M. Z.; Zaidan, D.; Massaquoi, M. S.; Larsch, J.; Tallafuss, A.; Guillemin, K.; Washbourne, P.; Eisen, J. S.: The microbiota promotes social behavior by modulating microglial remodeling of forebrain neurons. PLoS Biology 20 (11), e3001838 (2022)

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Brunner, C.; Macé, E.; Montaldo, G.; Urban, A.: Quantitative hemodynamic measurements in cortical vessels using functional ultrasound imaging. Frontiers in Neuroscience 16, 831650 (2022)

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Duffet, L.; Kosar, S.; Panniello, M.; Viberti, B.; Bracey, E.; Zych, A. D.; Radoux-Mergault, A.; Zhou, X.; Dernic, J.; Ravotto, L. et al.; Tsai, Y.-C.; Figueiredo, M.; Tyagarajan, S. K.; Weber, B.; Stoeber, M.; Gogolla, N.; Schmidt, M. H.; Adamantidis, A. R.; Fellin, T.; Burdakov, D.; Patriarchi, T.: A genetically encoded sensor for in vivo imaging of orexin neuropeptides. Nature Methods 19 (2), pp. 231 - 241 (2022)

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Ebert, M.; Jerke, U.; Eulenberg-Gustavus, C.; Kling, L.; Jenne, D. E.; Kirchner, M.; Mertins, P.; Bieringer, M.; Elitok, S.; Eckardt, K.-U. et al.; Schreiber, A.; Salama, A. D.; Kettritz, R.: Protective alpha1-antitrypsin effects in autoimmune vasculitis are compromised by methionine oxidation. The Journal of Clinical Investigation 132 (23), e160089 (2022)

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Eisenbeiser, S.; Serbe-Kamp, E.; Gage, G. J.; Marzullo, T. C.: Gills just want to have fun: Can fish play games, just like us? Animals 12 (13), 1684 (2022)

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Groschner, L. N.; Malis, J. G.; Zuidinga, B.; Borst, A.: A biophysical account of multiplication by a single neuron. Nature 603 (7899), pp. 119 - 123 (2022)

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Harbauer, A. B.; Hees, J. T.; Wanderoy, S.; Segura, I.; Gibbs, W.; Cheng, Y.; Ordonez, M.; Cai, Z.; Cartoni, R.; Ashrafi, G. et al.; Wang, C.; Perocchi, F.; He, Z.; Schwarz, T. L.: Neuronal mitochondria transport Pink1 mRNA via synaptojanin 2 to support local mitophagy. Neuron 110 (9), pp. 1516 - 1531.e9 (2022)

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Kessler, N.; Viehmann, S. F.; Krollmann, C.; Mai, K.; Kirschner, K. M.; Luksch, H.; Kotagiri, P.; Böhner, A. M. C.; Huugen, D.; de Oliveira Mann, C. C. et al.; Otten, S.; Weiss, S. A. I.; Zillinger, T.; Dobrikova, K.; Jenne, D. E.; Behrendt, R.; Ablasser, A.; Bartok, E.; Hartmann, G.; Hopfner, K.-P.; Lyons, P. A.; Boor, P.; Rösen-Wolff, A.; Teichmann, L. L.; Heeringa, P.; Kurts, C.; Garbi, N.: Monocyte-derived macrophages aggravate pulmonary vasculitis via cGAS/STING/IFN-mediated nucleic acid sensing. The Journal of experimental medicine 219 (10), e20220759 (2022)

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Obenhaus, H. A.; Zong, W.; Jacobsen, R. I.; Rose, T.; Donato, F.; Chen, L.; Cheng, H.; Bonhoeffer, T.; Moser, M.-B.; Moser, E. I.: Functional network topography of the medial entorhinal cortex. Proceedings of the National Academy of Sciences of the United States of America 119 (7), e2121655119 (2022)

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Overman, M. J.; Drummond, N.; Butler, C. R.; Ahmed, S.: Tracking the clinical progression of posterior cortical atrophy: Implications for post-diagnostic and therapeutic interventions. Journal of Neurology Neurosurgery and Psychiatry 93 (6), pp. 683 - 684 (2022)

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Oz, T.; Mengoli, V.; Rojas, J.; Jonak, K.; Braun, M.; Zagoriy, I.; Zachariae, W.: The Spo13/Meikin pathway confines the onset of gamete differentiation to meiosis II in yeast. The EMBO Journal 41 (4), e109446 (2022)

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Ribeiro, I. M. A.; Eßbauer, W.; Kutlesa, R.; Borst, A.: Spatial and temporal control of expression with light-gated LOV-LexA. G3: Genes, Genomes, Genetics 12 (10), jkac178 (2022)

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Riera Tur, I.; Schäfer, T.; Hornburg, D.; Mishra, A.; da Silva Padilha, M.; Fernández-Mosquera, L.; Feigenbutz, D.; Auer, P.; Mann, M.; Baumeister, W. et al.; Klein, R.; Meissner, F.; Raimundo, N.; Fernandez-Busnadiego, R.; Dudanova, I.: Amyloid-like aggregating proteins cause lysosomal defects in neurons via gain-of-function toxicity. Life science alliance 5 (3), e202101185 (2022)

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publisher-version

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Sarkar, T.; Lieberth, K.; Pavlou, A.; Frank, T.; Mailaender, V.; McCulloch, I.; Blom, P. W. M.; Torriccelli, F.; Gkoupidenis, P.: An organic artificial spiking neuron for in situ neuromorphic sensing and biointerfacing. Nature Electronics 5, pp. 774 - 783 (2022)

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Schubert, P. J.; Dorkenwald, S.; Januszewski, M.; Klimesch, J.; Svara, F. N.; Mancu, A.; Ahmad, H.; Fee, M. S.; Jain, V.; Kornfeld, J.: SyConn2: Dense synaptic connectivity inference for volume electron microscopy. Nature Methods 19, pp. 1367 - 1370 (2022)

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Strohm, L.; Hu, Z.; Suk, Y.; Rühmkorf, A.; Sternburg, E.; Gattringer, V.; Riemenschneider, H.; Berutti, R.; Graf, E.; Weishaupt, J. H. et al.; Brill, M. S.; Harbauer, A. B.; Dormann, D.; Dengjel, J.; Edbauer, D.; Behrends, C.: Multi-omics profiling identifies a deregulated FUS-MAP1B axis in ALS/FTD-associated UBQLN2 mutants. Life science alliance 5 (11), e202101327 (2022)

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Sun, F.; Salinas, A. G.; Filser, S.; Blumenstock, S.; Medina-Luque, J.; Herms, J.; Sgobio, C.: Impact of α-synuclein spreading on the nigrostriatal dopaminergic pathway depends on the onset of the pathology. Brain Pathology 32 (2), e13036 (2022)

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publisher-version

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Tallafuss, A.; Stednitz, S. J.; Voeun, M.; Levichev, A.; Larsch, J.; Eisen, J.; Washbourne, P.: Egr1 is necessary for forebrain dopaminergic signaling during social behavior. eNeuro 9 (2), 0035-22.2022 (2022)

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Udvary, D.; Harth, P.; Macke, J. H.; Hege, H.-C.; de Kock, C. P. J.; Sakmann, B.; Oberlaender, M.: The impact of neuron morphology on cortical network architecture. Cell Reports 39 (2), 110677 (2022)

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Vettkötter, D.; Schneider, M.; Goulden, B. D.; Dill, H.; Liewald, J.; Zeiler, S.; Guldan, J.; Ateş, Y. A.; Watanabe, S.; Gottschalk, A.: Rapid and reversible optogenetic silencing of synaptic transmission by clustering of synaptic vesicles. Nature Communications 13, 7827 (2022)

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Vicente, M.; Salgado-Almario, J.; Collins, M. M.; Martinez-Sielva, A.; Valiente-Gabioud, A. A.; Griesbeck, O.; Vincent, P.; Domingo, B.; Llopis, J.: Phenotyping calcium and contraction in a zebrafish model of phospholamban R9C mutation. Cardiovascular Research 118 (Suppl. 1), cvac066.125 (2022)

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von Bernhardi, J. E.; Biechl, D.; Miek, L.; Herget, U.; Ryu, S.; Wullimann, M. F.: A versatile transcription factor: Multiple roles of orthopedia a (otpa) beyond its restricted localization in dopaminergic systems of developing and adult zebrafish (Danio rerio) brains. The Journal of Comparative Neurology 530 (14), pp. 2537 - 2561 (2022)

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Wanderoy, S.; Rühmkorf, A.; Harbauer, A. B.: Microfluidics-assisted selective depolarization of axonal mitochondria. Journal of Visualized Experiments 186, e64196 (2022)

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Weiler, S.; Guggiana Nilo, D.; Bonhoeffer, T.; Hübener, M.; Rose, T.; Scheuss, V.: Orientation and direction tuning align with dendritic morphology and spatial connectivity in mouse visual cortex. Current Biology 32 (8), pp. 1743 - 1753.e7 (2022)

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Xiao, Y.; Petrucco, L.; Hoodless, L. J.; Portugues, R.; Czopka, T.: Oligodendrocyte precursor cells sculpt the visual system by regulating axonal remodeling. Nature Neuroscience 25 (3), pp. 280 - 284 (2022)

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Yoon, H.; Lee, Y.; Kang, H. J.; Ju, J.; Ji, Y.; Park, H.; Park, H.; Lee, H.; Holzapfel, W. H.: Two putative probiotic strains improve diet-induced hypercholesterolemia through modulating intestinal cholesterol uptake and hepatic cholesterol efflux. Journal of Applied Microbiology 132 (1), pp. 562 - 570 (2022)

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Zhao, J.; Feng, C.; Wang, W.; Su, L.; Jiao, J.: Human SERPINA3 induces neocortical folding and improves cognitive ability in mice. Cell discovery 8 (1), 124 (2022)

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2021

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Amaro, D.; Ferreiro, D. N.; Grothe, B.; Pecka, M.: Source identity shapes spatial preference in primary auditory cortex during active navigation. Current Biology 31 (17), pp. 3875 - 3883.e5 (2021)

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Barker, A. J.; Helmbrecht, T. O.; Grob, A. A.; Baier, H.: Functional, molecular and morphological heterogeneity of superficial interneurons in the larval zebrafish tectum. The Journal of Comparative Neurology 529 (9), pp. 2159 - 2175 (2021)

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Bauer, J.; Weiler, S.; Fernholz, M. H. P.; Laubender, D.; Scheuss, V.; Hübener, M.; Bonhoeffer, T.; Rose, T.: Limited functional convergence of eye-specific inputs in the retinogeniculate pathway of the mouse. Neuron 109 (15), pp. 2457 - 2468 (2021)

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