Publications of the MPI of Neurobiology

Journal Article

Meier, M.; Borst, A.: Extreme compartmentalization in a Drosophila amacrine cell. Current Biology 29 (9), pp. 1545 - 1550.e2 (2019)

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Mues, M.; Krishnamoorthy, G.: BReDi mouse: A novel transgenic mouse strain to track and deplete Bcells. European Journal of Immunology 49 (3), pp. 500 - 503 (2019)

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Paixao, S.; Loschek, L. F.; Gaitanos, L.; Alcala Morales, P. L.; Goulding, M.; Klein, R.: Identification of spinal neurons contributing to the dorsal column projection mediating fine touch and corrective motor movements. Neuron 104 (4), pp. 749 - 764.e6 (2019)

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Abstr

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Peters, A.; Wekerle, H.: Autoimmune diabetes mellitus and the leaky gut. Proceedings of the National Academy of Sciences of the United States of America 116 (30), pp. 14788 - 14790 (2019)

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Pollak, D. J.; Feller, K. D.; Serbe, E.; Mircic, S.; Gage, G. J.: An electrophysiological investigation of power-amplification in the ballistic mantis shrimp punch. Journal of undergraduate neuroscience education: JUNE: A publication of FUN, Faculty for Undergraduate Neuroscience 17 (2), pp. T12 - T18 (2019)

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Rehm, S. R. T.; Smirnova, N. F.; Morrone, C.; Goetzfried, J.; Feuchtinger, A.; Pedersen, J.; Korkmaz, B.; Yildirim, A. O.; Jenne, D. E.: Premedication with a cathepsin C inhibitor alleviates early primary graft dysfunction in mouse recipients after lung transplantation. Scientific Reports 9, 9925 (2019)

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Sayin, S.; De Backer, J.-F.; Siju, K. P.; Wosniack, M. E.; Lewis, L. P.; Frisch, L.-M.; Gansen, B.; Schlegel, P.; Edmondson-Stait, A.; Sharifi, N. et al.; Fisher, C. B.; Calle-Schuler, S. A.; Lauritzen, J. S.; Bock, D. D.; Costa, M.; Jefferis, G. S. X. E.; Gjorgjieva, J.; Grunwald Kadow, I. C.: A neural circuit arbitrates between persistence and withdrawal in hungry Drosophila. Neuron 104 (3), pp. 544 - 558.e6 (2019)

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Schilling, T.; Ali, A. H.; Leonhardt, A.; Borst, A.; Pujol-Marti, J.: Transcriptional control of morphological properties of direction-selective T4/T5 neurons in Drosophila. Development 146 (2), dev169763 (2019)

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Schmidt, F.; Dahlke, K.; Batra, A.; Keye, J.; Wu, H.; Friedrich, M.; Glauben, R.; Ring, C.; Loh, G.; Schaubeck, M. et al.; Hackl, H.; Trajanoski, Z.; Schumann, M.; Kuehl, A. A.; Blaut, M.; Siegmund, B.: Microbial colonization in adulthood shapes the intestinal macrophage compartment. Journal of Crohn's and Colitis 13 (9), pp. 1173 - 1185 (2019)

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Schubert, P. J.; Dorkenwald, S.; Januszewski, M.; Jain, V.; Kornfeld, J.: Learning cellular morphology with neural networks. Nature Communications 10, 2736 (2019)

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Shainer, I.; Michel, M.; Marquart, G. D.; Bhandiwad, A. A.; Zmora, N.; Livne, Z. B.-M.; Zohar, Y.; Hazak, A.; Mazon, Y.; Förster, D. et al.; Hollander-Cohen, L.; Cone, R. D.; Burgess, H. A.; Gothilf, Y.: Agouti-related protein 2 is a new player in the teleost stress response system. Current Biology 29 (12), pp. 2009 - 2019.e7 (2019)

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Sigmund, F.; Pettinger, S.; Kube, M.; Schneider, F.; Schifferer, M.; Schneider, S.; Efremova, M. V.; Pujol-Marti, J.; Aichler, M.; Walch, A. et al.; Misgeld, T.; Dietz, H.; Westmeyer, G. G.: Iron-sequestering nanocompartments as multiplexed electron microscopy gene reporters. ACS Nano 13 (7), pp. 8114 - 8123 (2019)

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Stanley, C. E.; Mauss, A. S.; Borst, A.; Cooper, R. L.: The effects of chloride flux on Drosophila heart rate. Methods and Protocols 2 (3), 73 (2019)

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Štih, V.; Petrucco, L.; Kist, A. M.; Portugues, R.: Stytra: An open-source, integrated system for stimulation, tracking and closed-loop behavioral experiments. PLoS Computational Biology 15 (4), e1006699 (2019)

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Stuerner, T.; Tatarnikova, A.; Mueller, J.; Schaffran, B.; Cuntz, H.; Zhang, Y.; Nemethova, M.; Bogdan, S.; Small, V.; Tavosanis, G.: Transient localization of the Arp2/3 complex initiates neuronal dendrite branching in vivo. Development 146 (7), dev171397 (2019)

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Teichert, M.; Isstas, M.; Liebmann, L.; Huebner, C. A.; Wieske, F.; Winter, C.; Lehmann, K.; Bolz, J.: Visual deprivation independent shift of ocular dominance induced by cross-modal plasticity. PLoS One 14 (3), e0213616 (2019)

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Trigo-Mourino, P.; Thestrup, T.; Griesbeck, O.; Griesinger, C.; Becker, S.: Dynamic tuning of FRET in a green fluorescent protein biosensor. Science Advances 5 (8), eaaw4988 (2019)

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Wekerle, H.: Secondary progressive multiple sclerosis and the gut-brain axis. Brain 142, pp. 838 - 840 (2019)

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Witte, M. E.; Schumacher, A.-M.; Mahler, C. F.; Bewersdorf, J. P.; Lehmitz, J.; Scheiter, A.; Sanchez, P.; Williams, P. R.; Griesbeck, O.; Naumann, R. et al.; Misgeld, T.; Kerschensteiner, M.: Calcium influx through plasma-membrane nanoruptures drives Axon degeneration in a model of multiple sclerosis. Neuron 101 (4), pp. 615 - 624.e5 (2019)

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Yashina, K.; Tejero-Cantero, A.; Herz, A.; Baier, H.: Zebrafish exploit visual cues and geometric relationships to form a spatial memory. iScience 19, pp. 119 - 134 (2019)

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2018

Journal Article

Bednarova, V.; Grothe, B.; Myoga, M. H.: Complex and spatially segregated auditory inputs of the mouse superior colliculus. Journal of Physiology 596 (21), pp. 5281 - 5298 (2018)

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Beiderbeck, B.; Myoga, M. H.; Mueller, N. I. C.; Callan, A. R.; Friauf, E.; Grothe, B.; Pecka, M.: Precisely timed inhibition facilitates action potential firing for spatial coding in the auditory brainstem. Nature Communications 9, 1771 (2018)

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Berer, K.; Martinez, I.; Walker, A.; Kunkel, B.; Schmitt-Kopplin, P.; Walter, J.; Krishnamoorthy, G.: Dietary non-fermentable fiber prevents autoimmune neurological disease by changing gut metabolic and immune status. Scientific Reports 8, 10431 (2018)

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Bernal Sierra, Y. A.; Rost, B. R.; Pofahl, M.; Fernandes, A. M.; Kopton, R. A.; Moser, S.; Holtkamp, D.; Masala, N.; Beed, P.; Tukker, J. J. et al.; Oldani, S.; Boenigk, W.; Kohl, P.; Baier, H.; Schneider-Warme, F.; Hegemann, P.; Beck, H.; Seifert, R.; Schmitz, D.: Potassium channel-based optogenetic silencing. Nature Communications 9, 4611 (2018)

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Boergens, K. M.; Kapfer, C.; Helmstaedter, M.; Denk, W.; Borst, A.: Full reconstruction of large lobula plate tangential cells in Drosophila from a 3D EM dataset. PLoS One 13 (11), e0207828 (2018)

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Borst, A.: A biophysical mechanism for preferred direction enhancement in fly motion vision. PLoS Computational Biology 14 (6), e1006240 (2018)

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Busch, C.; Borst, A.; Mauss, A. S.: Bi-directional control of walking behavior by horizontal optic flow sensors. Current Biology 28 (24), pp. 4037 - 4045.e5 (2018)

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Dan, O.; Hopp, E.; Borst, A.; Segev, I.: Non-uniform weighting of local motion inputs underlies dendritic computation in the fly visual system. Scientific Reports 8, 5787 (2018)

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Fabritius, A.; Ng, D.; Kist, A. M.; Erdogan, M.; Portugues, R.; Griesbeck, O.: Imaging-based screening platform assists protein engineering. Cell Chemical Biology 25 (12), pp. 1554 - 1561.e8 (2018)

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Förster, D.; Kramer, A.; Baier, H.; Kubo, F.: Optogenetic precision toolkit to reveal form, function and connectivity of single neurons. Methods 150, pp. 42 - 48 (2018)

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Goetzfried, J.; Smirnova, N. F.; Morrone, C.; Korkmaz, B.; Yildirim, A. O.; Eickelberg, O.; Jenne, D. E.: Preservation with α1-antitrypsin improves primary graft function of murine lung transplants. The Journal of Heart and Lung Transplantation 37 (8), pp. 1021 - 1028 (2018)

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Goltstein, P. M.; Reinert, S.; Glas, A.; Bonhoeffer, T.; Hübener, M.: Food and water restriction lead to differential learning behaviors in a head-fixed two-choice visual discrimination task for mice. PLoS One 13 (9), e0204066 (2018)

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Grothe, B.: How the Barn Owl Computes Auditory Space. Trends in Neurosciences 41 (3), pp. 115 - 117 (2018)

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Guarino, C.; Gruba, N.; Grzywa, R.; Dyguda-Kazimierowicz, E.; Hamon, Y.; Legowska, M.; Skorenski, M.; Dallet-Choisy, S.; Marchand-Adam, S.; Kellenberger, C. et al.; Jenne, D. E.; Sienczyk, M.; Lesner, A.; Gauthier, F.; Korkmaz, B.: Exploiting the S4-S5 specificity of human neutrophil proteinase 3 to improve the potency of deptidyl Di(chlorophenyl)-phosphonate ester inhibitors: A kinetic and molecular modeling analysis. Journal of Medicinal Chemistry 61 (5), pp. 1858 - 1870 (2018)

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Haehnel-Taguchi, M.; Fernandes, A. M.; Boehler, M.; Schmitt, I.; Tittel, L.; Driever, W.: Projections of the diencephalospinal dopaminergic system to peripheral sense organs in larval zebrafish (Danio rerio). Frontiers in Neuroanatomy 12, 20 (2018)

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Helmbrecht, T. O.; Dal Maschio, M.; Donovan, J. C.; Koutsouli, S.; Baier, H.: Topography of a visuomotor transformation. Neuron 100 (6), pp. 1429 - 1445.e4 (2018)

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Hinaux, H.; Bachem, K.; Battistara, M.; Rossi, M.; Xin, Y.; Jaenichen, R.; Le Poul, Y.; Arnoult, L.; Kobler, J. M.; Kadow, I. C. G. et al.; Rodermund, L.; Prud'homme, B.; Gompel, N.: Revisiting the developmental and cellular role of the pigmentation gene yellow in Drosophila using a tagged allele. Developmental Biology 438 (2), pp. 111 - 123 (2018)

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Holze, C.; Michaudel, C.; Mackowiak, C.; Haas, D. A.; Benda, C.; Hubel, P.; Pennemann, F. L.; Schnepf, D.; Wettmarshausen, J.; Braun, M. et al.; Leung, D. W.; Amarasinghe, G. K.; Perocchi, F.; Staeheli, P.; Ryffel, B.; Pichlmair, A.: Oxeiptosis, a ROS-induced caspase-independent apoptosis-like cell-death pathway. Nature Immunology 18, pp. 130 - 140 (2018)

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Hussain, A.; Pooryasin, A.; Zhang, M.; Loschek, L. F.; La Fortezza, M.; Friedrich, A. B.; Blais, C.-M.; Üçpunar, H. K.; Yepez, V. A.; Lehmann, M. et al.; Gompel, N.; Gagneur, J.; Sigrist, S. J.; Grunwald Kadow, I. C.: Inhibition of oxidative stress in cholinergic projection neurons fully rescues aging-associated olfactory circuit degeneration in Drosophila. eLife 7, e32018 (2018)

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Januszewski, M.; Kornfeld, J.; Li, P. H.; Pope, A.; Blakely, T.; Lindsey, L.; Maitin-Shepard, J.; Tyka, M.; Denk, W.; Jain, V.: High-precision automated reconstruction of neurons with flood-filling networks. Nature Methods 15 (8), pp. 605 - 610 (2018)

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Kist, A. M.; Lampert, A.; O'Reilly, A. O.: DIsulfide Mapping PLanner Software Tool. Journal of Computational Biology 25 (4), pp. 430 - 434 (2018)

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Klein, R.: Building a better brain: Making new connections. Cell 175 (3), pp. 633 - 634 (2018)

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Kornfeld, J.; Denk, W.: Progress and remaining challenges in high-throughput volume electron microscopy. Current Opinion in Neurobiology 50, pp. 261 - 267 (2018)

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Krahmer, N.; Najafi, B.; Schueder, F.; Quagliarini, F.; Steger, M.; Seitz, S.; Kasper, R.; Salinas, F.; Cox, J.; Uhlenhaut, N. H. et al.; Walther, T. C.; Jungmann, R.; Zeigerer, A.; Borner, G. H. H.; Mann, M.: Organellar proteomics and phospho-proteomics reveal subcellular reorganization in diet-induced hepatic steatosis. Developmental Cell 47 (2), pp. 205 - 221.e7 (2018)

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Kubota, Y.; Sohn, J.; Hatada, S.; Schurr, M.; Straehle, J.; Gour, A.; Neujahr, R.; Miki, T.; Mikula, S.; Kawaguchi, Y.: A carbon nanotube tape for serial-section electron microscopy of brain ultrastructure. Nature Communications 9, 437 (2018)

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Larsch, J.; Baier, H.: Biological motion as an innate perceptual mechanism driving social affiliation. Current Biology 28 (22), pp. 3523 - 3532.e4 (2018)

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Mayer, C.; Fishell, G.: Nascent neurons need nature and nurture. Nature 560 (7716), pp. 39 - 40 (2018)

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Nelson, J. O.; Förster, D.; Frizzell, K. A.; Luschnig, S.; Metzstein, M. M.: Multiple nonsense-mediated mRNA processes require Smg5 in Drosophila. Genetics 209 (4), pp. 1073 - 1084 (2018)

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Petrik, D.; Myoga, M. H.; Grade, S.; Gerkau, N. J.; Pusch, M.; Rose, C. R.; Grothe, B.; Goetz, M.: Epithelial sodium channel regulates adult neural stem cell proliferation in a flow-dependent manner. Cell Stem Cell 22 (6), pp. 865 - 878.e8 (2018)

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